| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aborlan | Sea/Bay/Gulf | native | 114805 |
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 3280 |
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Bataraza | Sea/Bay/Gulf | native | 114805 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3280 |
| Brooke's Point | Sea/Bay/Gulf | native | 114805 |
| Calauag Bay | Sea/Bay/Gulf | native | 47571 |
| Chang-hwa | Sea/Bay/Gulf | native | 43515 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 7300 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Erhjen River | River (basin) | native | 36073 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 33390 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3280 |
| Gulf of California | Sea/Bay/Gulf | native | 37955 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3280 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3280 |
| Honda Bay | Sea/Bay/Gulf | native | 71000 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 43515 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3280 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 3280 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| Narra | Sea/Bay/Gulf | native | 114805 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Central-American Coastal | Sea/Bay/Gulf | native | 3280 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Palearctic | Zoogeographic realm | endemic | 13724 |
| Peng-hu Island | Sea/Bay/Gulf | native | 43515 |
| Persian Gulf | Sea/Bay/Gulf | native | 3280 |
| Peru-Galapagos Waters | Sea/Bay/Gulf | native | 5227 |
| Polynesian Waters | Sea/Bay/Gulf | native | 12792 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Ruerhmen River | River (basin) | native | 36073 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Shihtsao River | River (basin) | native | 36073 |
| Shiliao River | River (basin) | native | 36073 |
| Sofronio Española | Sea/Bay/Gulf | native | 114805 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3287 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42484 |
| Taal Lake | Lake | native | 12165 |
| Tahiti Basins | River (basin) | native | 12792 |
| Tahiti I. | Sea/Bay/Gulf | native | 12792 |
| Tai-chung | Sea/Bay/Gulf | native | 43515 |
| Tañon Strait | Sea/Bay/Gulf | native | 107276 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Tsengwen River | River (basin) | native | 36073 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 57038 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43515 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |