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| No. | Valid Name | Author | English Name |
| 1. | Zoogoneticus purhepechus | Domínguez-Domínguez, Pérez-Rodríguez & Doadrio, 2008 | |
| 2. | Zoogoneticus quitzeoensis | (Bean, 1898) | Picotee goodeid |
| 3. | Zoogoneticus tequila | Webb & Miller, 1998 | Tequila splitfin |